PyMOL is an open-source molecular visualization tool written in Python. The program has a number of different visualization options and presentation settings. The program also has the ability to create animations of molecular visualizations in 3D.
Using PyMOL on RCC Resources
PyMOL is installed in the Spear cluster path. To execute it, connect to Spear with graphical forwarding enabled:
ssh -X spear-login.rcc.fsu.edu
PyMOL is installed in the Spear path
Testing PyMOL with Sample Data
- Upload the sample data package to Spear.
- Untar the sample data:
tar -xvf Data.tar
- Run PyMOL with the sample data:
To learn more, refer to the official PyMol Wiki.