Introduction

NiftyReg is a suite of image registration and alignment tools primarily intended for use with MRI and other brain scan images. It serves as a dependency for many other MRI analysis programs such as S3. Detailed information on the usage of each of the tools in NiftyReg can be found in The Documentation

Using NiftyReg on HPC

In order to use NiftyReg, you will need to load the GNU module. From there, you will need to load the NiftyReg module in order to get access to the tools.  These commands are as follows:

module load gnu
module load niftyreg

From there, all of the NiftyReg tools should be available to you. For information on the tools themselves, please see The Documentation