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NiftyReg

MRI Image Registration Tool

Homepage Version(s): 1.3.9

NiftyReg requires an environment module

In order to use NiftyReg, you must first load the appropriate environment module: 

module load gnu niftyreg

NiftyReg is a suite of image registration and alignment tools primarily intended for use with MRI and other brain scan images. It serves as a dependency for many other MRI analysis programs such as S3.

Using NiftyReg on HPC#

In order to use NiftyReg, you will need to load the GNU module. From there, you will need to load the NiftyReg module in order to get access to the tools. These commands are as follows:

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# First load the gnu niftyreg module..
$ module load gnu niftyreg

# ..then, all of the NiftyReg tools should be available
$ reg_aladin --help 
$ reg_f3d --help
$ reg_resample --help
etc...