MUMmer is a bioinformatics program designed to align very large genomic and protein sequence datasets using an ultra-fast algorithm. The program is designed specifically to handle aligning entire genomes very quickly.
Using MUMmer on RCC Resources
Using MUMmer on RCC resources does not require a module to be loaded.
To run MUMmer via the command line, use the format
mummer -[OPTIONS] REF_FILE QUERY. Replace the
-[OPTIONS] with the list of options required for your job. Replace the
REF_FILE argument with your reference file and the
QUERY argument with your query file(s).