MUMmer
MUMmer
MUMmer is a bioinformatics program designed to align very large genomic and protein sequence datasets using an ultra-fast algorithm. The program is designed specifically to handle aligning entire genomes very quickly.
Using MUMmer on RCC Resources
Using MUMmer on RCC resources does not require a module to be loaded.
To run MUMmer via the command line, use the format
$ mummer -[OPTIONS] REF_FILE QUERY
Replace the -[OPTIONS]
argument with the list of options required for your job. Replace the REF_FILE
argument with your reference file and the QUERY
argument with your query file(s).
For detail usage documentation for MUMmer, refer to the official website, where you will find a user manual and a set of tutorials for the program.