HTSeq is a python package designed to take in sequence data from high-throughput genetic sequencing technologies and then process this data for further analysis. The package can handle reading and writing of sequence data, analysis of read quality and much more. The full documentation can be found at the main page for the package.

Using HTSeq on RCC Resources

HTSeq must be installed in a virtual environment.  The basic workflow for this is as follows:

python3 venv ~/test # You can name the virtual environment anything you want, test is an example
source ~/test/bin/activate
pip install HTSeq

Once you have this installed, you should be able to run HTSeq from within your virtual environment by running:

python3
>> import HTSeq