FSL

Software Category
Version
6.0.5, 6.0.2

FSL

FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. It runs on Apple and PCs (both Linux, and Windows via a Virtual Machine). Most of the tools can be run both from the command line and as GUIs ("point-and-click" graphical user interfaces).

Usage:

To use FSL, set up the environment varibles as the following (e.g., add to the .bashrc file)

## FOR BOTH VERSIONS (DO THIS FIRST)
module load gnu python/2

## FOR VERSION 6.0.5
$ module load gnu python/2
$ export FSLDIR=/gpfs/research/software/FSL/6.0.5_source/fsl
$ . ${FSLDIR}/etc/fslconf/fsl.sh
$ export PATH=$PATH:/gpfs/research/software/FSL/6.0.5_source/fsl/bin
$ fsl_sub_config shell

## FOR VERSION 6.0.2
$ export FSLDIR=/gpfs/research/software/FSL/6.0.2/install
$ export PATH=$PATH:/gpfs/research/software/FSL/6.0.2/install/bin