Publications

The Research Computing Center support projects that result in published academic papers.

The following publications have resulted from work done in partnership with the RCC.

Publication List

  1. Equilibrium, Metastability, and Hysteresis in a Model Spin-crossover Material with Nearest-neighbor Antiferromagnetic-like and P. A. Rikvold, G. Brown, S. Miyashita, C. Omand, and M. Nishino Physical Review B (2016)
  2. A Simple Gravitational Lens Model for Cosmic Voids Bin Chen, Ronald Kantowski, Xinyu Dai The Astrophysical Journal, (2015)
  3. Birnessite: A Layered Manganese Oxide to Capture Sunlight for Water-Splitting Catalysis Kevin Paul Lucht and Jose Luis Mendoza-Cortes J. Phys. Chem. C (2015)
  4. Algorithms And Programs For Strong Gravitational Lensing In Kerr Space-time Including Polarization Bin Chen, Ronald Kantowski, Xinyu Dai, Eddie Baron, Prasad Maddumage The Astrophysical Journal Supplement Series, (2015)
  5. Embedded Lensing Time Delays, The Fermat Potential, And The Integrated Sachs–Wolfe Effect Bin Chen, Ronald Kantowski, Xinyu Dai Astrophysical Journal (2015)
  6. Integrated Sachs-Wolfe effect versus redshift test for the cosmological parameters Ronald Kantowski, Bin Chen, Xinyu Dai Physical Review D (2015)
  7. Probing the integrated Sachs-Wolfe effect using embedded lens models Bin Chen, Ronald Kantowski Physical Review D (2015)
  8. A pseudoatomic model of the COPII cage obtained from cryo-electron microscopy and mass spectrometry Alex J Noble, Qian Zhang, Jason O'Donnell, Hanaa Hariri, Nilakshee Bhattacharya, Alan G Marshall & Scott M Stagg Nature Structural & Molecular Biology (2013)
  9. Relative Stability of Peptide Sequence Ions Generated by Tandem Mass Spectrometry Bythell, B. J.; Hendrickson, C. L.; Marshall, A. G. J. Am. Soc. Mass Spectrom. (2012)
  10. To Jump or Not To Jump? Cα Hydrogen Atom Transfer in Post-cleavage Radical-Cation Complexes B. J. Bythell J. Phys. Chem. A (2012)
  11. A modeling study of the interaction between the Atlantic Warm Pool, the tropical Atlantic easterlies, and the Lesser Antilles Steven C. Chan, Vasubandhu Misra, and Henry Smith Journal of Geophysical Research - Atmospheres (2011)
  12. Conference Notebook: Potential Implications of Tropical Cyclone Passage Schenkel, B., and R. Hart Bulletin of the American Meteorological Society (2011)
  13. Kinetic Monte Carlo simulations of a model for heat-assisted magnetization reversal in ultrathin films W.R. Deskins, G. Brown, S.H. Thompson, P.A. Rikvold Physical Review B Vol. 84 (2011)
  14. Parameter estimation by Density Functional Theory for a lattice-gas model of Br and Cl chemisorption on Ag(100) Tjipto Juwono, Ibrahim Abou Hamad, Per Arne Rikvold, Sanwu Wang Journal of Electroanalytical Chemistry Vol 662 (2011)
  15. Quadrupole collectivity in the two-body random ensemble Volha Abramkina and Alexander Volya Physical Review C (2011)
  16. Simulation of melting of two-dimensional Lennard-Jones solids Keola Wierschem and Efstratios Manousakis Physical Review B, Vol. 83 (2011)
  17. Simulation of the Hurricane Dennis storm surge and considerations for vertical resolution Dukhovskoy, D.S., and S.L. Morey Journal of Natural Hazards (2011)
  18. A model-averaging method for assessing groundwater conceptual model uncertainty Ye, M., K.F. Pohlmann, J.B. Chapman, G.M. Pohll, and D.M. Reeves Ground Water (2010)
  19. Conformational ladscape of platinum(II)-tetraamine complexes: DFT and NBO studies Yongye, A.; Giulianotti, M. A.; Nefzi, A.; Houghten, R. A.; Martinez-Mayorga, K. Journal of Computer Aided Molecular Design (2010)
  20. Conformationally Gated Fragmentations and Rearrangements Promoted by Interception of the Bergman Cyclization through Intramolecular H-Abstraction: A Possible Mechanism of Auto-Resistance to Natural... Abdulkader Baroudi, Justin Mauldin and Igor V. Alabugin Journal of the American Chemical Society (2010)
  21. Measurements and modeling of topographically trapped waves along the Sigsbee Escarpment Morey, S.L., D. S. Dukhovskoy, and C. Cooper Offshore Technology Conference, Houston, TX (2010)
  22. MMA: A computer code for multimodel analysis Ye, M. Ground Water (2010)
  23. Quantum tunneling and scattering of a composite object reexamined Naureen Ahsan and Alexander Volya Physical Review C (2010)
  24. The overland reintensification of North Atlantic Tropical Cyclone Erin (2007): physical and dynamical characteristics Clark Evans, Russ S. Schumacher, and Thomas J. Galarneau, Jr. 29th Conference on Hurricanes and Tropical Meteorology (2010)
  25. Two modes of magnetization switching in a simulated iron nanopillar in an obliquely oriented field Thompson, S.H.; Brown, G.; Rikvold, P.A. and Novotny, M.A. Journal of Physics: Condensed Matter, Vol. 22 (2010)
  26. Unified Framework to Evaluate Panmixia and Migration Direction Among Multiple Sampling Locations. Beerli, P., M. Palczewski Genetics (2010)
  27. "Crash and Safety Assessment Program for Paratransit Buses" Leslaw Kwasniewski, Jeff Siervogel, Cezary Bojanowski, Jerry W. Wekezer, Krzysztof Cichocki International Journal of Impact Engineering (2009)
  28. A geologically based Markov chain model for simulating tritum transport with uncertain conditions in a nuclear-stimulated natural gas reservoir Ye, M., C.A. Cooper, J.B. Chapman, D. Gillespie, and Y. Zhang SPE Reservoir Evaluation & Engineering (2009)
  29. Conformational heterogeneity of the M2 proton channel and a structural model for channel activation. Myunggi Yi, Timothy A. Cross, Huan-Xiang Zhou Proceedings of the National Academy of Sciences of the United States of America (2009)
  30. Dissection of the high rate constant for the binding of a ribotoxin to the ribosome # Sanbo Qin and Sanbo Qin and Huan-Xiang Zhou Proc Natl Acad Sci U S A (2009)
  31. Modeling of Peptides Containing D-Amino Acids: Implications on Cyclization Austin Yongye, Yangmei Li, Marc Giulianotti, Yongping Yu, Richard Houghten, Karina Martinez-Mayorga Journal of Computer-Aided Molecular Design (2009)
  32. Molecular dynamics simulation of F-actin: Studying the mechanisms for semi-flexible filament assembly reveals the role of cross-linkers. Nguyen, L. T., Yang, W., Wang, Q., and Hirst, L. S. Soft Matter 5 (2009)
  33. Molecular mechanisms of functional rescue mediated by p53 tumor. Tan, Y. H., Chen, Y. M., Ye, X., Lu, Q., Tretyachenko-Ladokhina, V., Yang, W., Senear, D. F., and Lu Biophys. Chem. 145 (2009)