We want to thank everybody for being patient while we worked to resolved issues related to our software maintenance on the HPC and Spear. Due to a number of unique circumstances, some items took longer to complete than we had originally anticipated. Our team is cleaning up the last of the residual issues now, but we can confidently state that the cluster is back online and operating nomrally
Additionally, we are pleased to provide newer versions of over 400 software packages. The full list is below. If you would like us to install any software on the HPC, you can always let us know.
abinit 8.8.3
abyss 2.1.0
adobe-source-code-pro-fonts 2.030.1.050
adobe-source-sans-pro-fonts 2.020
apr 1.6.3
arpack 3.5.0
atsas 2.8.0
bbftp-client 3.2.1
bbreceiver 20161020
bcl2fastq2 2.20.0.422
beagle 2.1
beast 1.10.0
best 2.3.1
bigdft 1.6.0
blat 34
boost 1.66.0
boost-intel 1.66.0
bowtie 1.0.1
bowtie2 2.3.2
bwa 0.7.15
cairo 1.14.8
cdo 1.6.9
ceres-solver 1.13.0
CGAL-4.9 0.2.beta1
charmm 41
clang 6.0.0
clustalw 2.1
clustalx 2.1
cmake 3.11.1
cpuset-1.5.7 43.4
createrepo 0.10.3
ctags 5.8
cudnn 7.0.5
cufflinks 2.1.1
Cython 0.25.2
daq 2.0.6
dcraw 9.28.0
dyninst 9.3.2
eigen3 3.3.4
elpa 2017.05.003
elph 1.0.1
fasta 36.3.8e
fastqc 0.11.5
ffmpeg 3.1.7
fftw2 2.1.5
fftw2-intel 2.1.5
fftw2-pgi 2.1.5
fftw 3.3.5
fftw 3.3.8
fftw-intel 3.3.8
fftw-pgi 3.3.8
FIAT 1.6.0.dev0
fonttools 3.8.0
FPLO14.00 49
freefem++ 0.3.1
freexl 1.0.2
futile 1.8
ga 5.6.5
GaIn 1.0
gcc 7.3.1
gcc731 7.3.1
gd 2.2.5
gdal 2.2.4
gerris 1.3.2
git 2.12.0
glimmer 3.02b
globus-cli 1.4.0
globus-cli 1.7.0
gmm 5.0
grads 2.0.2
grib_api 1.27.0
gromacs 2018.2
gtkglext 1.2.0
gts_gerris-0.7.6 48.1
gulp 4.4
h5py 2.8.0
hdf 4.2.13
hdf5 1.10.2
hdf5-intel 1.10.2
hdf5-pgi 1.10.2
hdf-intel 4.2.13
hdf-pgi 4.2.13
hdfview 2.11.0
hmmer 3.1b2
hpc-modules 2.14
HTSeq 0.6.1
hwloc 1.11.10
hypre 2.14.0
hypre 2.8.0b
hypre-intel 2.8.0b
i40e 2.4.6
iipsrv-1.0.0 6.0
intel-pgi-fakedeps 2
ipython 3.2.1
iqs-client 1.0
isl 0.16.1
jags 4.2.0
julia 0.6.3
lame 3.100
lammps 20180822
lammps-intel 20180822
lammps-pgi 20180822
lapack 3.8.0
last 833
lastfmlib 0.4.0
libbitmask 2.0
libctl 3.2.2
libctl 4.1.2
libebml 1.3.4
libffi 3.1
libgeotiff 1.4.0
libgit2 0.26.5
libmatheval 1.1.11
libmatroska 1.4.8
libmemcached 1.0.18
libpfm 4.10.1
libspatialite 4.3.0a
libsx 2.05
libtirpc-1.0.3 2.rc2
libtool 2.4.6
libunwind 1.2.1
libxc 3.0.0
libxcb 1.13
llvm3.9 3.9.1
llvm 6.0.0
Lmod 7.7.35
lustre-dkms 2.8.0
mafft 7.309
make 4.2.1
mauve-2.4.0 1HPC
MCT 2.10.0
MCT-intel 2.10.0
MCT-pgi 2.10.0
migrate-n 3.6.11
mira 4.0.2
mirage 0.9.5.2
mkvtoolnix 7.4.0
mmtsb 1
molden 5.8
motd 1.1
mpb 1.5
mpi4py 2.0.0
mpiblast 1.6.0
mpifasta 3.4
mpihmmer-0.92 2HPC_OPENMPI
mpimrbayes-new 3.2.1
mrbayes-new 3.2.1
mummer 3.23
mvapich2 2.3rc2
mvapich2_intel 2.3rc2
mvapich2_pgi 2.3rc2
namd 2.10
namd-intel 2.10
nasm 2.13.03
ncl 6.4.0
ncl-intel 6.4.0
ncl-pgi 6.4.0
nco 4.7.5
nco-intel 4.7.5
ncview 2.1.8
nedit 5.7
netcdf 4.6.1
netcdf-c 4.6.1
netcdf-cxx 4.2
netcdf-cxx 4.3.0
netcdf-cxx4 4.3.0
netcdf-cxx4-intel 4.3.0
netcdf-cxx-intel 4.2
netcdf-cxx-pgi 4.2
netcdf-fortran 4.4.4
netcdf-fortran-intel 4.4.4
netcdf-fortran-pgi 4.4.4
netcdf-intel 4.6.1
netcdf-pgi 4.6.1
newtonx 1.4.0.2
numpy 1.14.5
ocaml-sexplib 7.0.5
ocaml-type-conv 3.0.5
octave 4.2.2
ogdi 3.2.1
opa-fm 10.7.0.0
openblas 0.2.14
openblas 0.3.2
openblas-intel 0.2.14
openblas-intel 0.3.2
openblas-pgi 0.3.2
opencv 3.2.0
openlibm 0.5.3
openmpi 3.1.0
openmpi_intel 3.1.0
openmpi_llvm 3.1.0
openmpi-paultest 3.1.0
openmpi_pgi 3.1.0
orca 4.0.0.2
parallel-kmeans 1
paraview 5.5.2
parmetis 4.0.3
parmetis-intel 4.0.3
parmetis-pgi 4.0.3
pcsc-perl 1.4.14
pdtoolkit 3.25
perl-Array-Utils 0.5
perl-Set-IntSpan 1.19
pgplot 5.2.2
php 7.2.9
php-7.2.9
php-pear 1.10.5
pjproject 2.7.2
pnetcdf 1.10.0
pnetcdf-intel 1.10.0
proj 4.9.3
psutil 2.2.1
pygtkglext 1.1.0
pyhdf 0.8.3
pyOpenSSL 18.0.0
python3 3.7.0
python-ase 3.16.2
python-biopython 1.72
python-packaging 16.8
python-pkgconfig 1.3.1
python-psutil 5.4.7
python-pygments 2.2.0
python-rpm-generators 5
python-shapely 1.6.4
python-ttfquery-1.0.4 5.8_
python-twisted-18.7.0 2.fc29
python-urllib3 1.23
python-virtualenv 16.0.0
R2spec 4.2.1
R-3.5.1 3.5.1
R-3.5.1-abind 1.4_5
R-3.5.1-acepack 1.4.1
R-3.5.1-ade4 1.7_11
R-3.5.1-affy 1.58.0
R-3.5.1-affyio 1.50.0
R-3.5.1-ald 1.2
R-3.5.1-annaffy 1.52.0
R-3.5.1-annotate 1.58.0
R-3.5.1-AnnotationDbi 1.42.1
R-3.5.1-assertthat 0.2.0
R-3.5.1-backports 1.1.2
R-3.5.1-base64enc 0.1_3
R-3.5.1-BH 1.66.0_1
R-3.5.1-bindr 0.1.1
R-3.5.1-bindrcpp 0.2.2
R-3.5.1-Biobase 2.40.0
R-3.5.1-BiocGenerics 0.22.1
R-3.5.1-BiocGenerics 0.26.0
R-3.5.1-BiocInstaller 1.26.1
R-3.5.1-BiocInstaller 1.30.0
R-3.5.1-BiocParallel 1.14.2
R-3.5.1-Biostrings 2.48.0
R-3.5.1-bit 1.1_14
R-3.5.1-bit64 0.9_7
R-3.5.1-bitops 1.0_6
R-3.5.1-blob 1.1.1
R-3.5.1-brew 1.0_6
R-3.5.1-broom 0.5.0
R-3.5.1-caret 6.0_80
R-3.5.1-caTools 1.17.1.1
R-3.5.1-cellranger 1.1.0
R-3.5.1-checkmate 1.8.5
R-3.5.1-cli 1.0.0
R-3.5.1-coda 0.19_1
R-3.5.1-colorspace 1.3_2
R-3.5.1-crayon 1.3.4
R-3.5.1-curl 3.2
R-3.5.1-CVST 0.2_2
R-3.5.1-data.table 1.11.4
R-3.5.1-DBI 1.0.0
R-3.5.1-ddalpha 1.3.4
R-3.5.1-DelayedArray 0.6.4
R-3.5.1-DEoptimR 1.0_8
R-3.5.1-DESeq 1.32.0
R-3.5.1-dichromat 2.0_0
R-3.5.1-digest 0.6.15
R-3.5.1-dimRed 0.1.0
R-3.5.1-doSNOW 1.0.16
R-3.5.1-dplyr 0.7.6
R-3.5.1-DRR 0.0.3
R-3.5.1-ergm 3.9.4
R-3.5.1-ergm.count 3.3.0
R-3.5.1-evaluate 0.11
R-3.5.1-fansi 0.2.3
R-3.5.1-flare 1.6.0
R-3.5.1-flsa 1.05
R-3.5.1-foreach 1.4.4
R-3.5.1-formatR 1.5
R-3.5.1-Formula 1.2_3
R-3.5.1-futile.logger 1.4.3
R-3.5.1-futile.options 1.0.1
R-3.5.1-gcrma 2.52.0
R-3.5.1-gdata 2.18.0
R-3.5.1-genefilter 1.62.0
R-3.5.1-geneplotter 1.58.0
R-3.5.1-GenomeInfoDb 1.16.0
R-3.5.1-GenomeInfoDbData 0.99.0
R-3.5.1-GenomeInfoDbData 1.1.0
R-3.5.1-GenomicAlignments 1.16.0
R-3.5.1-GenomicRanges 1.32.6
R-3.5.1-geometry 0.3_6
R-3.5.1-ggplot2 3.0.0
R-3.5.1-ghyp 1.5.7
R-3.5.1-glmnet 2.0_16
R-3.5.1-glue 1.3.0
R-3.5.1-GO.db 3.6.0
R-3.5.1-gower 0.1.2
R-3.5.1-gplots 3.0.1
R-3.5.1-graph 1.58.0
R-3.5.1-gridExtra 2.3
R-3.5.1-gtable 0.2.0
R-3.5.1-gtools 3.8.1
R-3.5.1-hexbin 1.27.2
R-3.5.1-HiDimDA 0.2_4
R-3.5.1-highr 0.7
R-3.5.1-Hmisc 4.1_1
R-3.5.1-hms 0.4.2
R-3.5.1-htmlTable 1.12
R-3.5.1-htmltools 0.3.6
R-3.5.1-htmlwidgets 1.2
R-3.5.1-httpuv 1.4.5
R-3.5.1-httr 1.3.1
R-3.5.1-hwriter 1.3.2
R-3.5.1-igraph 1.2.2
R-3.5.1-INLA 18.07.12
R-3.5.1-inline 0.3.15
R-3.5.1-ipred 0.9_6
R-3.5.1-IRanges 2.14.10
R-3.5.1-iterators 1.0.10
R-3.5.1-jsonlite 1.5
R-3.5.1-KEGG.db 3.2.3
R-3.5.1-KEGGgraph 1.40.0
R-3.5.1-kernlab 0.9_26
R-3.5.1-kernlab 0.9_27
R-3.5.1-knitr 1.20
R-3.5.1-labeling 0.3
R-3.5.1-lambda.r 1.2.3
R-3.5.1-later 0.7.3
R-3.5.1-latticeExtra 0.6_28
R-3.5.1-lava 1.6.3
R-3.5.1-lazyeval 0.2.1
R-3.5.1-limma 3.32.10
R-3.5.1-limma 3.36.2
R-3.5.1-locfit 1.5_9.1
R-3.5.1-lpSolve 5.6.13
R-3.5.1-lubridate 1.7.4
R-3.5.1-MADAM 1.2.2
R-3.5.1-made4 1.54.0
R-3.5.1-magic 1.5_8
R-3.5.1-magrittr 1.5
R-3.5.1-manipulate 1.0.1
R-3.5.1-markdown 0.8
R-3.5.1-matrixcalc 1.0_3
R-3.5.1-MatrixModels 0.4_1
R-3.5.1-matrixStats 0.54.0
R-3.5.1-memoise 1.1.0
R-3.5.1-mime 0.5
R-3.5.1-mnormt 1.5_5
R-3.5.1-ModelMetrics 1.2.0
R-3.5.1-multtest 2.36.0
R-3.5.1-munsell 0.5.0
R-3.5.1-mvtnorm 1.0_8
R-3.5.1-network 1.13.0.1
R-3.5.1-networkDynamic 0.9.0
R-3.5.1-numDeriv 2016.8_1
R-3.5.1-openintro 1.7.1
R-3.5.1-openssl 1.0.2
R-3.5.1-penalizedLDA 1.1
R-3.5.1-pillar 1.3.0
R-3.5.1-pkgconfig 2.0.1
R-3.5.1-plogr 0.2.0
R-3.5.1-plotrix 3.7_2
R-3.5.1-pls 2.6_0
R-3.5.1-plyr 1.8.4
R-3.5.1-praise 1.0.0
R-3.5.1-preprocessCore 1.38.1
R-3.5.1-preprocessCore 1.42.0
R-3.5.1-prettyunits 1.0.2
R-3.5.1-prodlim 2018.04.18
R-3.5.1-progress 1.2.0
R-3.5.1-promises 1.0.1
R-3.5.1-psych 1.8.4
R-3.5.1-purrr 0.2.5
R-3.5.1-qrLMM 1.3
R-3.5.1-quantreg 5.36
R-3.5.1-qvalue 2.12.0
R-3.5.1-R6 2.2.2
R-3.5.1-RColorBrewer 1.1_2
R-3.5.1-Rcpp 0.12.18
R-3.5.1-RcppRoll 0.3.0
R-3.5.1-RCurl 1.95_4.11
R-3.5.1-readxl 1.1.0
R-3.5.1-recipes 0.1.3
R-3.5.1-rematch 1.0.1
R-3.5.1-reshape2 1.4.3
R-3.5.1-rgdal 1.3_4
R-3.5.1-Rgraphviz 2.24.0
R-3.5.1-rlang 0.2.1
R-3.5.1-robustbase 0.93_2
R-3.5.1-Rsamtools 1.32.2
R-3.5.1-RSQLite 2.1.1
R-3.5.1-rstudioapi 0.7
R-3.5.1-rtracklayer 1.40.3
R-3.5.1-S4Vectors 0.18.3
R-3.5.1-scales 1.0.0
R-3.5.1-scatterplot3d 0.3_41
R-3.5.1-sendmailR 1.2_1
R-3.5.1-sfsmisc 1.1_2
R-3.5.1-shiny 1.1.0
R-3.5.1-sna 2.4
R-3.5.1-snow 0.4_2
R-3.5.1-sourcetools 0.1.7
R-3.5.1-sp 1.3_1
R-3.5.1-SparseM 1.77
R-3.5.1-SPIA 2.32.0
R-3.5.1-SQUAREM 2017.10_1
R-3.5.1-StanHeaders 2.17.2
R-3.5.1-statmod 1.4.30
R-3.5.1-statnet 2016.9
R-3.5.1-statnet.common 4.1.4
R-3.5.1-stringi 1.2.4
R-3.5.1-stringr 1.3.1
R-3.5.1-SummarizedExperiment 1.10.1
R-3.5.1-swirl 2.4.3
R-3.5.1-tergm 3.5.2
R-3.5.1-testthat 2.0.0
R-3.5.1-tibble 1.4.2
R-3.5.1-tidyr 0.8.1
R-3.5.1-tidyselect 0.2.4
R-3.5.1-timeDate 3043.102
R-3.5.1-timereg 1.9.2
R-3.5.1-trust 0.1_7
R-3.5.1-utf8 1.1.4
R-3.5.1-viridis 0.5.1
R-3.5.1-viridisLite 0.3.0
R-3.5.1-vsn 3.48.1
R-3.5.1-webbioc 1.52.0
R-3.5.1-withr 2.1.2
R-3.5.1-XML 3.98_1.13
R-3.5.1-XML 3.98_1.15
R-3.5.1-xtable 1.8_2
R-3.5.1-XVector 0.20.0
R-3.5.1-yaml 2.2.0
R-3.5.1-zlibbioc 1.22.0
R-3.5.1-zlibbioc 1.26.0
rhash 1.3.5
rssh 2.3.4
samtools 0.1.19
scalapack 2.0.2
scalapack-intel 2.0.2
scalapack-pgi 2.0.2
scipy 1.1.0
scotch 6.0.6
scotch-intel 6.0.6
scotch-pgi 6.0.6
SFML 2.4.2
siesta 4.1_b3
singularity 2.5.999
slurm 17.11.7
snort 2.9.11.1
source-highlight 3.1.8
sparsehash 2.0.2
squashfs-tools 4.3
sra_sdk 2.3.5
STAR 2.5.3a
stress-ng 0.07.29
suitesparse 4.4.6
SuperLU 5.2.1
superlu_dist 5.4.0
superlu_dist-intel 5.4.0
superlu_dist-pgi 5.4.0
SuperLU-intel 5.2.1
SuperLU-pgi 5.2.1
svgalib 1.9.25
systemtap 3.3
szip 2.1.1
szip-intel 2.1.1
szip-pgi 2.1.1
tcl-tktreectrl 2.4.1
tophat 2.1.1
trans-ABySS 2.0.1
tre-0.8.0 16.20140228gitc2f5d13
trimmomatic 0.38
trlan-201009 2.2
utf8proc 2.2.0
vmd 1.9.3
vtk 7.1.1
wgrib 1.8.1.2c
wombat 1
xcb-proto 1.13
xmgrace 5.1.25
xorg-x11-util-macros 1.19.2
yasm 1.3.0