Partial list of new package versions for Aug 16 upgrade

Below is a partial list of new package versions for software on the HPC that will be upgraded during the August 16 - 20 software upgrade.

Important Note: This list is not comprehensive and subject to change. We will update it as we are able to. If you have questions about a particular software package, please feel free to reach out to us.

abinit    9.4.1
apr    1.7.0
armadillo    10.2.0
arpack    3.7.0
atsas    3.0.3
bam    0.5.1
bcftools    1.9
bcl2fastq2    2.20.0.422
best    2.3.1
blat    34
boost    1.69.0
bowtie    1.3.0
bwa    0.7.17
cairo    1.17.4
ceres-solver    2.0.0
cgnslib    4.1.1
Charm    6.10.2
clustalw    2.1
clustalx    2.1
cmake    3.20.2
cpuset    1.6
ctags    5.9
cudnn    7.0.5
daq    2.0.6
dcraw    9.28.0
dpkg    1.20.9
dSFMT    2.2.3
eccodes    2.18.0
eigen3    3.3.7
elpa    2017.05.003
elph    1.0.1
fasta    36.3.8e
fastqc    0.11.7
fastx_toolkit    0.0.14
ffmpeg    3.1.7
fftw2    2.1.5
fftw    3.3.9
fmt    7.0.3
fonttools    4.22.1
FPLO14.00    49
freefem++    4.7
freexl    1.0.6
g2clib    1.6.3
ga    5.7.2
gdal    3.3.0
geos    3.9.1
git    2.32.0
glimmer    3.02b
glm    0.9.9.8
gmm    5.4
grib_api    1.27.0
gromacs    2021.2
gts_gerris-0.7.6    48.1
gulp    6.0
hdf    4.2.15
hdf5    1.12.0
hdfview    3.0.0
hmmer    3.1b2
htslib    1.9
hwloc    2.4.1
hypre    2.18.2
icu    50.2
jags    4.2.0
julia    1.6.1
lammps    20201029
lapack    3.9.1
leptonica    1.80.0
libbitmask    2.0
libebml    1.4.2
libgit2    1.1.0
libgtextutils    0.7
libharu    2.3.0
libmatheval    1.1.11
libmatroska    1.6.2
libpfm    4.11.0
librttopo    1.1.0
libspatialite    5.0.1
libunwind    1.4.0
libuv    1.41.0
libva    2.11.0
llvm    12.0.1
lttng-ust    2.12.1
mauve-2.4.0    1HPC
mbedtls    2.16.9
MCT    2.10.0
migrate-n-4    4.4.3
mirage    0.9.5.2
mmtsb    1
mock-core-configs    34.3
mpi4py    3.0.0
mpifasta    3.4
mpihmmer-0.92    2HPC_OPENMPI
mpimrbayes-new    3.2.1
mummer    3.23
mvapich2    2.3.5
nasm    2.15.03
ncl    6.6.2
nco    4.9.8
nedit    5.7
netcdf    4.8.0
netcdf-cxx    4.3.1
netcdf-fortran    4.5.3
netcdf-intel    4.8.0
ninja-build    1.10.2
NLopt    2.6.2
nwchem    7.0.2
octave    5.2.0
openblas    0.3.15
openlibm    0.5.3
openmpi    4.1.0
orca    4.1.2
parmetis    4.0.3
perl-Array-Utils    0.5
perl-Set-IntSpan    1.19
pgplot    5.2.2
pnetcdf    1.8.1
pstreams-devel    1.0.3
pyhdf    0.10.3
python-ase    3.21.1
python-breathe    4.13.0
python-empy    3.3.4
python-pkgconfig    1.5.2
python-websockify    0.9.0
quantum-espresso    6.5
R    4.1.0
rhash    1.4.0
samtools    1.9
scalapack    2.0.2
scotch    6.1.0
SFML    2.5.1
singularity    3.7.3
source-highlight    3.1.9
sparsehash    2.0.2
STAR    2.7.9a
suitesparse    5.4.0
SuperLU    5.2.1
svgalib    1.9.25
szip    2.1.1
t1lib    5.1.2
tcl-tktreectrl    2.4.1
tetgen    1.6.0
tophat    2.1.1
trans-ABySS    1.5.5
trimmomatic    0.36
trlan-201009    2.2
userspace-rcu    0.13.0
utf8proc    2.6.1
vmd    1.9.1
wannier_tools    2.4.1
wgrib    1.8.2
wombat    1
xcb-proto    1.14.1
yasm    1.3.0