Recently updated software on the HPC:
abinit 8.2.2
abyss 2.0.2
apr 1.5.2
arpack 3.1.5
atsas 2.8.0
autoconf 2.69
bbftp-client 3.2.1
bbreceiver 20161020
beagle 2.1
beast 1.8.4
best 2.3.1
bigdft 1.6.0
blat 34
blcr 0.8.6_b4
boost 1.63.0
bowtie 1.2
bowtie2 2.3.2
bwa 0.7.15
cairo 1.14.8
cdo 1.6.9
CGAL 4.9
chapel 1.13.0
charmm 41
CheSS 1.0
clustalw 2.1
clustalx 2.1
cmake 3.7.2
cpuset 1.5.6
cufflinks 2.1.1
Cython 0.25.2
daq 2.0.6
dcraw 9.27.0
deal.II 8.4.1
dyninst 9.3.1
eigen3 3.3.3
elph 1.0.1
fasta 36.3.8e
fastqc 0.11.5
ffmpeg 3.1.7
fftw2 2.1.5
fftw 3.3.5
FIAT 1.6.0.dev0
fonttools 3.8.0
FPLO14.00 49
freefem++ 3.53
freexl 1.0.2
futile 1.8
ga 5.5
GaIn 1.0
gdal 2.1.0
gerris 1.3.2
git 2.12.0
glimmer 3.02b
gmm 5.0
grads 2.0.2
grib_api 1.19.0
gromacs 2016.2
gtkglext 1.2.0
gtkglextmm 1.2.0
gts_gerris 0.7.6
gulp 4.4
h5py 2.5.0
hdf 4.2.12
hdf5 1.8.16
hdfview 2.11.0
hmmer 3.1b2
HTSeq 0.6.1
hwloc 1.11.6
hypre 2.11.1
iipsrv-1.0.0 6.0
ImageMagick 6.9.3.0
ipython 3.2.1
iqs-client 1.0
jags 4.2.0
julia 0.5.0
lame 3.99.5
lammps 20160309
lapack 3.6.1
last 833
libbitmask 2.0
libffi 3.1
libgeotiff 1.4.0
libgit2 0.25.1
libglademm24 2.6.7
libmatheval 1.1.11
libmemcached 1.0.18
libpfm 4.8.0
libspatialite 4.3.0a
libsx 2.05
libunwind 1.1
libxc 3.0.0
libxcb 1.12
llvm3.7 3.7.1
Lmod 7.3.20
mafft 7.309
mauve 2.4.0
MCT 2.9.0
migrate-n 3.6.11
mira 4.0.2
mirage 0.9.5.2
mmtsb 1
moltemplate 2.1.2
motd 1.1
mpi4py 2.0.0
mpiblast 1.6.0
mpifasta 3.4
mpihmmer 0.92
mpimrbayes 3.1.2
mpimrbayes-new 3.2.1
mrbayes 3.1.2
mrbayes-new 3.2.1
mummer 3.23
mvapich2 2.2
namd 2.10
nasm 2.12.02
ncl 6.4.0
nco 4.6.5
ncview 2.1.8
nedit 5.6
netcdf 4.4.1.1
netcdf-c 4.3.3.1
netcdf-cxx 4.2
netcdf-fortran 4.4.4
newtonx 1.4.0.2
numpy 1.12.0
nwchem 6.5.26243
ocaml-sexplib 7.0.5
ocaml-type-conv 3.0.5
octave 4.2.1
ogdi-3.2.0 0.26.beta2
openblas 0.2.19
openlibm 0.5.3
openmpi 2.1.0rc3
parallel-kmeans 1
paraview 4.4.0
paraview-openmpi 4.4.0
parmetis 4.0.3
pastix 5.2.2.20
pdtoolkit 3.23
perl-Array-Utils 0.5
perl-IO-Compress-Bzip2 2.015
perl-Set-IntSpan 1.19
pgplot 5.2.2
php 7.1.5
php-pear 1.10.1
php-pecl-apcu 5.1.8
php-pecl-igbinary 2.0.4
php-pecl-memcached 3.0.3
php-pecl-msgpack 2.0.2
pnetcdf 1.8.1
povray 3.7
primme 1.1
proj 4.9.2
psolver 1.8
psutil 5.2.2
pygtkglext 1.1.0
pyhdf 0.8.3
pyOpenSSL 16.2.0
python3 3.5.1
python-ase 3.13.0
python-biopython 1.68
python-pkgconfig 1.2.2
python-polygon2 2.0.4
python-shapely 1.5.16
python-six 1.10.0
python-ttfquery 1.0.4
python-urllib3 1.20
python-visual 5.74
quantum-espresso 5.4.0
R 3.4.0
samtools 0.1.19
scalapack 2.0.2
schroedinger 1.0.11
scipy 0.18.0
scotch 6.0.4
six 1.10.0
slurm 17.02.3
snort 2.9.7.3
source-highlight 3.1.8
sparsehash 2.0.2
sra_sdk 2.3.5
STAR 2.5.3a
suitesparse 4.4.6
SuperLU 5.2.0
svgalib 1.9.25
szip 2.1
tophat 2.1.1
trans-ABySS 1.5.5
tre 0.8.0
trimmomatic 0.36
trlan 201009
utf8proc 2.1.0
vmd 1.9.1
vtk 7.1.1
wgrib 1.8.1.2c
wombat 1
xcb-proto 1.12
xmgrace 5.1.25
xorg-x11-util-macros 1.19.0
yasm 1.3.0